J3_9TZ9_017

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9TZ9|1|a|A|2534, 9TZ9|1|a|U|2535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TZ9_017 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1589

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9TZ9|1|a|C|2533
9TZ9|1|a|A|2534
9TZ9|1|a|U|2535
9TZ9|1|a|C|2536
*
9TZ9|1|a|G|2561
9TZ9|1|a|U|2562
9TZ9|1|a|A|2563
*
9TZ9|1|a|U|2577
9TZ9|1|a|U|2578
9TZ9|1|a|U|2579
9TZ9|1|a|A|2580
9TZ9|1|a|A|2581
9TZ9|1|a|A|2582
9TZ9|1|a|G|2583

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain x

Large ribosomal subunit protein uL14