J3_9UZK_006

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9UZK|1|2|G|987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|A|934
9UZK|1|2|U|935
9UZK|1|2|U|936
9UZK|1|2|C|937
*
9UZK|1|2|G|981
9UZK|1|2|G|982
9UZK|1|2|A|983
9UZK|1|2|C|984
9UZK|1|2|C|985
9UZK|1|2|A|986
9UZK|1|2|G|987
9UZK|1|2|A|988
9UZK|1|2|G|989
*
9UZK|1|2|C|996
9UZK|1|2|A|997
9UZK|1|2|U|998
9UZK|1|2|U|999
9UZK|1|2|U|1000

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein eS1

Chain P

Small ribosomal subunit protein uS15

Chain Q

Ribosomal protein S14

Chain b

Small ribosomal subunit protein eS26