J3_9UZK_008

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|C|1214
9UZK|1|2|C|1215
9UZK|1|2|A|1216
9UZK|1|2|G|1217
*
9UZK|1|2|C|1640
9UZK|1|2|C|1641
9UZK|1|2|A|1642
9UZK|1|2|G|1643
9UZK|1|2|U|1644
9UZK|1|2|A|1645
9UZK|1|2|A|1646
*
9UZK|1|2|U|1668
9UZK|1|2|G|1669
9UZK|1|2|A|1670
9UZK|1|2|U|1671
9UZK|1|2|U|1672
9UZK|1|2|A|1673
9UZK|1|2|A|1674
9UZK|1|2|G|1675

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS9

Chain d

Small ribosomal subunit protein eS28