J3_9UZK_012
3D structure
- PDB id
- 9UZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S with initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9UZK|1|2|U|1336
9UZK|1|2|C|1337
9UZK|1|2|U|1338
9UZK|1|2|U|1339
9UZK|1|2|A|1340
9UZK|1|2|G|1341
*
9UZK|1|2|C|1380
9UZK|1|2|G|1381
9UZK|1|2|A|1382
9UZK|1|2|G|1383
9UZK|1|2|A|1384
9UZK|1|2|C|1385
*
9UZK|1|2|G|1477
9UZK|1|2|C|1478
9UZK|1|2|A|1479
9UZK|1|2|A|1480
9UZK|1|2|U|1481
9UZK|1|2|A|1482
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain F
- Small ribosomal subunit protein uS3
- Chain S
- Small ribosomal subunit protein uS9
- Chain T
- Small ribosomal subunit protein eS17
- Chain W
- Small ribosomal subunit protein uS10
- Chain e
- Small ribosomal subunit protein uS14
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