J3_9UZK_016

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9UZK|1|2|U|1530, 9UZK|1|2|U|1594, 9UZK|1|2|G|1598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|C|1527
9UZK|1|2|A|1528
9UZK|1|2|C|1529
9UZK|1|2|U|1530
9UZK|1|2|G|1531
*
9UZK|1|2|C|1592
9UZK|1|2|G|1593
9UZK|1|2|U|1594
9UZK|1|2|G|1595
9UZK|1|2|A|1596
9UZK|1|2|U|1597
9UZK|1|2|G|1598
9UZK|1|2|G|1599
*
9UZK|1|2|C|1630
9UZK|1|2|G|1631
9UZK|1|2|A|1632
9UZK|1|2|G|1633

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain U

Small ribosomal subunit protein uS13

Chain V

Small ribosomal subunit protein eS19

Chain h

Small ribosomal subunit protein eS25