J3_9UZL_006

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9UZL|1|2|G|987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|A|934
9UZL|1|2|U|935
9UZL|1|2|U|936
9UZL|1|2|C|937
*
9UZL|1|2|G|981
9UZL|1|2|G|982
9UZL|1|2|A|983
9UZL|1|2|C|984
9UZL|1|2|C|985
9UZL|1|2|A|986
9UZL|1|2|G|987
9UZL|1|2|A|988
9UZL|1|2|G|989
*
9UZL|1|2|C|996
9UZL|1|2|A|997
9UZL|1|2|U|998
9UZL|1|2|U|999
9UZL|1|2|U|1000

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein eS1

Chain P

Small ribosomal subunit protein uS15

Chain Q

Ribosomal protein S14

Chain b

Small ribosomal subunit protein eS26