J3_9UZL_008

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|C|1214
9UZL|1|2|C|1215
9UZL|1|2|A|1216
9UZL|1|2|G|1217
*
9UZL|1|2|C|1640
9UZL|1|2|C|1641
9UZL|1|2|A|1642
9UZL|1|2|G|1643
9UZL|1|2|U|1644
9UZL|1|2|A|1645
9UZL|1|2|A|1646
*
9UZL|1|2|U|1668
9UZL|1|2|G|1669
9UZL|1|2|A|1670
9UZL|1|2|U|1671
9UZL|1|2|U|1672
9UZL|1|2|A|1673
9UZL|1|2|A|1674
9UZL|1|2|G|1675

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS17

Chain d

Small ribosomal subunit protein eS28