J3_9VTH_005
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUUC*GAACAACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9VTH|1|11|C|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_005 not in the Motif Atlas
- Homologous match to J3_9H3G_033
- Geometric discrepancy: 0.0974
- The information below is about J3_9H3G_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.2
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|11|A|884
9VTH|1|11|U|885
9VTH|1|11|U|886
9VTH|1|11|C|887
*
9VTH|1|11|G|931
9VTH|1|11|A|932
9VTH|1|11|A|933
9VTH|1|11|C|934
9VTH|1|11|A|935
9VTH|1|11|A|936
9VTH|1|11|C|937
9VTH|1|11|U|938
9VTH|1|11|G|939
*
9VTH|1|11|C|946
9VTH|1|11|A|947
9VTH|1|11|U|948
9VTH|1|11|U|949
9VTH|1|11|U|950
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain Lq
- 60S ribosomal protein L37a
- Chain SI
- 40S ribosomal protein S14-2
- Chain SP
- Small ribosomal subunit protein eS1
- Chain Sb
- 40S ribosomal protein S26
Coloring options: