J3_9VTH_006
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCA*UUAUG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9VTH|1|11|U|1085, 9VTH|1|11|A|1096
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_006 not in the Motif Atlas
- Homologous match to J3_9PN5_034
- Geometric discrepancy: 0.314
- The information below is about J3_9PN5_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|11|C|1040
9VTH|1|11|C|1041
9VTH|1|11|A|1042
*
9VTH|1|11|U|1082
9VTH|1|11|U|1083
9VTH|1|11|A|1084
9VTH|1|11|U|1085
9VTH|1|11|G|1086
*
9VTH|1|11|C|1093
9VTH|1|11|A|1094
9VTH|1|11|A|1095
9VTH|1|11|A|1096
9VTH|1|11|G|1097
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS2
- Chain SF
- Small ribosomal subunit protein uS8c
- Chain SY
- 40S ribosomal protein S21
- Chain Sb
- 40S ribosomal protein S26
- Chain Sc
- 40S ribosomal protein S27
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