J3_9VTH_007
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGACUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_007 not in the Motif Atlas
- Homologous match to J3_9H3G_035
- Geometric discrepancy: 0.0893
- The information below is about J3_9H3G_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|C|1164
9VTH|1|11|C|1165
9VTH|1|11|A|1166
9VTH|1|11|G|1167
*
9VTH|1|11|C|1587
9VTH|1|11|U|1588
9VTH|1|11|A|1589
9VTH|1|11|G|1590
9VTH|1|11|U|1591
9VTH|1|11|A|1592
9VTH|1|11|A|1593
*
9VTH|1|11|U|1615
9VTH|1|11|G|1616
9VTH|1|11|A|1617
9VTH|1|11|C|1618
9VTH|1|11|U|1619
9VTH|1|11|A|1620
9VTH|1|11|C|1621
9VTH|1|11|G|1622
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S5
- Chain SG
- 40S ribosomal protein S16
- Chain Sd
- 40S ribosomal protein S28
Coloring options: