J3_9VTH_008
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_008 not in the Motif Atlas
- Homologous match to J3_9PN5_036
- Geometric discrepancy: 0.072
- The information below is about J3_9PN5_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|U|1171
9VTH|1|11|G|1172
9VTH|1|11|G|1173
9VTH|1|11|A|1174
*
9VTH|1|11|U|1473
9VTH|1|11|A|1474
9VTH|1|11|C|1475
*
9VTH|1|11|G|1580
9VTH|1|11|G|1581
9VTH|1|11|A|1582
9VTH|1|11|A|1583
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain 16
- Transfer RNA; tRNA
- Chain SE
- 40S ribosomal protein S5
- Chain SG
- 40S ribosomal protein S16
- Chain SK
- 40S ribosomal protein S18
- Chain SX
- 40S ribosomal protein S19-3-like
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