J3_9VTH_011
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_011 not in the Motif Atlas
- Homologous match to J3_9H3G_039
- Geometric discrepancy: 0.0919
- The information below is about J3_9H3G_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|11|U|1286
9VTH|1|11|C|1287
9VTH|1|11|U|1288
9VTH|1|11|U|1289
9VTH|1|11|A|1290
9VTH|1|11|G|1291
*
9VTH|1|11|C|1330
9VTH|1|11|G|1331
9VTH|1|11|A|1332
9VTH|1|11|G|1333
9VTH|1|11|A|1334
9VTH|1|11|C|1335
*
9VTH|1|11|G|1424
9VTH|1|11|C|1425
9VTH|1|11|A|1426
9VTH|1|11|A|1427
9VTH|1|11|U|1428
9VTH|1|11|A|1429
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SB
- 30S ribosomal protein S3, chloroplastic
- Chain SD
- Small ribosomal subunit protein uS5
- Chain SG
- 40S ribosomal protein S16
- Chain SH
- 40S ribosomal protein S20-2
- Chain SL
- 40S ribosomal protein S29
- Chain SW
- 40S ribosomal protein S17-like
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