J3_9VTH_014
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AGC*GGACUAC*GCGGAAGUUU
- Length
- 20 nucleotides
- Bulged bases
- 9VTH|1|11|U|1418, 9VTH|1|11|U|1419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_014 not in the Motif Atlas
- Homologous match to J3_9H3G_042
- Geometric discrepancy: 0.1498
- The information below is about J3_9H3G_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|11|A|1339
9VTH|1|11|G|1340
9VTH|1|11|C|1341
*
9VTH|1|11|G|1391
9VTH|1|11|G|1392
9VTH|1|11|A|1393
9VTH|1|11|C|1394
9VTH|1|11|U|1395
9VTH|1|11|A|1396
9VTH|1|11|C|1397
*
9VTH|1|11|G|1411
9VTH|1|11|C|1412
9VTH|1|11|G|1413
9VTH|1|11|G|1414
9VTH|1|11|A|1415
9VTH|1|11|A|1416
9VTH|1|11|G|1417
9VTH|1|11|U|1418
9VTH|1|11|U|1419
9VTH|1|11|U|1420
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S5
- Chain SG
- 40S ribosomal protein S16
- Chain SH
- 40S ribosomal protein S20-2
- Chain SL
- 40S ribosomal protein S29
- Chain SW
- 40S ribosomal protein S17-like
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