J3_9VTH_015
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9VTH|1|11|U|1478, 9VTH|1|11|G|1545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_015 not in the Motif Atlas
- Homologous match to J3_9PN5_043
- Geometric discrepancy: 0.0793
- The information below is about J3_9PN5_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.4
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|C|1475
9VTH|1|11|A|1476
9VTH|1|11|C|1477
9VTH|1|11|U|1478
9VTH|1|11|G|1479
*
9VTH|1|11|C|1539
9VTH|1|11|G|1540
9VTH|1|11|U|1541
9VTH|1|11|G|1542
9VTH|1|11|A|1543
9VTH|1|11|U|1544
9VTH|1|11|G|1545
9VTH|1|11|G|1546
*
9VTH|1|11|C|1577
9VTH|1|11|G|1578
9VTH|1|11|A|1579
9VTH|1|11|G|1580
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain 10
- RNA (204-MER)
- Chain SE
- 40S ribosomal protein S5
- Chain SK
- 40S ribosomal protein S18
- Chain SX
- 40S ribosomal protein S19-3-like
- Chain Sa
- 40S ribosomal protein S25
Coloring options: