J3_9VTH_016
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9VTH|1|12|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_016 not in the Motif Atlas
- Geometric match to J3_9AXU_026
- Geometric discrepancy: 0.1342
- The information below is about J3_9AXU_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.4
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9VTH|1|12|U|9
9VTH|1|12|C|10
9VTH|1|12|A|11
9VTH|1|12|U|12
9VTH|1|12|A|13
9VTH|1|12|C|14
*
9VTH|1|12|G|65
9VTH|1|12|G|66
*
9VTH|1|12|U|109
9VTH|1|12|G|110
Current chains
- Chain 12
- 5S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- 60S ribosomal protein L11-1
- Chain LJ
- 60S ribosomal protein L10
- Chain LK
- 60S ribosomal protein L5-like
- Chain LY
- 60S ribosomal protein L21-1-like
Coloring options: