J3_9VTH_027
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGG*CGCAG*UCUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_027 not in the Motif Atlas
- Homologous match to J3_9H3G_013
- Geometric discrepancy: 0.0937
- The information below is about J3_9H3G_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.4
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9VTH|1|14|C|839
9VTH|1|14|G|840
9VTH|1|14|G|841
*
9VTH|1|14|C|873
9VTH|1|14|G|874
9VTH|1|14|C|875
9VTH|1|14|A|876
9VTH|1|14|G|877
*
9VTH|1|14|U|902
9VTH|1|14|C|903
9VTH|1|14|U|904
9VTH|1|14|G|905
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L8-like
- Chain LW
- Ribosomal protein L19
Coloring options: