J3_9VTH_029
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAAGAG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|14|A|1493, 9VTH|1|14|A|1495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_029 not in the Motif Atlas
- Homologous match to J3_9PN5_012
- Geometric discrepancy: 0.0779
- The information below is about J3_9PN5_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.4
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9VTH|1|14|C|1490
9VTH|1|14|G|1491
9VTH|1|14|A|1492
9VTH|1|14|A|1493
9VTH|1|14|G|1494
9VTH|1|14|A|1495
9VTH|1|14|G|1496
*
9VTH|1|14|C|1863
9VTH|1|14|A|1864
9VTH|1|14|A|1865
*
9VTH|1|14|U|1877
9VTH|1|14|C|1878
9VTH|1|14|U|1879
9VTH|1|14|G|1880
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LW
- Ribosomal protein L19
- Chain Li
- Large ribosomal subunit protein eL34
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