J3_9VTH_030
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|14|U|1846, 9VTH|1|14|A|1847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_030 not in the Motif Atlas
- Homologous match to J3_9H3G_016
- Geometric discrepancy: 0.0677
- The information below is about J3_9H3G_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.4
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|14|G|1499
9VTH|1|14|A|1500
9VTH|1|14|A|1501
9VTH|1|14|A|1502
*
9VTH|1|14|U|1843
9VTH|1|14|C|1844
9VTH|1|14|A|1845
9VTH|1|14|U|1846
9VTH|1|14|A|1847
9VTH|1|14|A|1848
9VTH|1|14|C|1849
*
9VTH|1|14|G|1858
9VTH|1|14|U|1859
9VTH|1|14|C|1860
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Li
- Large ribosomal subunit protein eL34
- Chain Lk
- Ribosomal protein L37
- Chain Lm
- 60S ribosomal protein L39-3
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