J3_9VTH_031
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_031 not in the Motif Atlas
- Homologous match to J3_9H3G_017
- Geometric discrepancy: 0.1128
- The information below is about J3_9H3G_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9VTH|1|14|U|1537
9VTH|1|14|C|1538
9VTH|1|14|G|1539
9VTH|1|14|A|1540
9VTH|1|14|U|1541
9VTH|1|14|C|1542
*
9VTH|1|14|G|1596
9VTH|1|14|G|1597
9VTH|1|14|A|1598
9VTH|1|14|A|1599
9VTH|1|14|U|1600
*
9VTH|1|14|A|1617
9VTH|1|14|A|1618
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LM
- Large ribosomal subunit protein uL23
- Chain Li
- Large ribosomal subunit protein eL34
- Chain Ll
- 60S ribosomal protein L38
- Chain Lm
- 60S ribosomal protein L39-3
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