J3_9VTH_033

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GA*UUAGG*CC

Length

9 nucleotides

Bulged bases

9VTH|1|14|U|1646, 9VTH|1|14|A|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9VTH_033 not in the Motif Atlas

Homologous match to J3_9H3G_019

Geometric discrepancy: 0.2259

The information below is about J3_9H3G_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.4

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9VTH|1|14|G|1635
9VTH|1|14|A|1636
*
9VTH|1|14|U|1645
9VTH|1|14|U|1646
9VTH|1|14|A|1647
9VTH|1|14|G|1648
9VTH|1|14|G|1649
*
9VTH|1|14|C|1816
9VTH|1|14|C|1817

Current chains

Chain 14

25S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L27

Chain Li

Large ribosomal subunit protein eL34