J3_9VTH_034

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9VTH_034 not in the Motif Atlas

Homologous match to J3_9AXU_018

Geometric discrepancy: 0.0812

The information below is about J3_9AXU_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.4

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

8

Unit IDs

9VTH|1|14|A|1658
9VTH|1|14|G|1659
9VTH|1|14|A|1660
9VTH|1|14|C|1661
9VTH|1|14|G|1662
*
9VTH|1|14|C|1797
9VTH|1|14|C|1798
*
9VTH|1|14|G|1802
9VTH|1|14|A|1803
9VTH|1|14|A|1804
9VTH|1|14|A|1805
9VTH|1|14|A|1806
9VTH|1|14|U|1807

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L8-like

Chain Li

Large ribosomal subunit protein eL34

Chain Lq

60S ribosomal protein L37a