J3_9VTH_041
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCU*AAAUA*UCCG
- Length
- 12 nucleotides
- Bulged bases
- 9VTH|1|14|A|3308, 9VTH|1|14|C|3382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_041 not in the Motif Atlas
- Homologous match to J3_9AXU_025
- Geometric discrepancy: 0.573
- The information below is about J3_9AXU_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|C|3290
9VTH|1|14|C|3291
9VTH|1|14|U|3292
*
9VTH|1|14|A|3306
9VTH|1|14|A|3307
9VTH|1|14|A|3308
9VTH|1|14|U|3309
9VTH|1|14|A|3310
*
9VTH|1|14|U|3381
9VTH|1|14|C|3382
9VTH|1|14|C|3383
9VTH|1|14|G|3384
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L3
- Chain LL
- 60S ribosomal protein L17-1 isoform X2
- Chain Lf
- 60S ribosomal protein L31
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