J3_9VVI_006
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9VVI|1|A|U|871, 9VVI|1|A|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VVI_006 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.2211
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9VVI|1|A|C|826
9VVI|1|A|U|827
9VVI|1|A|U|828
9VVI|1|A|G|829
*
9VVI|1|A|C|857
9VVI|1|A|G|858
9VVI|1|A|G|859
9VVI|1|A|A|860
9VVI|1|A|G|861
*
9VVI|1|A|C|868
9VVI|1|A|G|869
9VVI|1|A|U|870
9VVI|1|A|U|871
9VVI|1|A|A|872
9VVI|1|A|A|873
9VVI|1|A|G|874
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain H
- Small ribosomal subunit protein uS8
- Chain U
- 30S ribosomal protein S21
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