J3_9VVI_013
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VVI_013 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.1389
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VVI|1|A|C|1063
9VVI|1|A|G|1064
9VVI|1|A|U|1065
9VVI|1|A|C|1066
9VVI|1|A|A|1067
9VVI|1|A|G|1068
*
9VVI|1|A|C|1107
9VVI|1|A|G|1108
9VVI|1|A|C|1109
9VVI|1|A|A|1110
9VVI|1|A|A|1111
9VVI|1|A|C|1112
9VVI|1|A|C|1113
*
9VVI|1|A|G|1187
9VVI|1|A|A|1188
9VVI|1|A|U|1189
9VVI|1|A|G|1190
9VVI|1|A|A|1191
9VVI|1|A|C|1192
9VVI|1|A|G|1193
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain E
- Small ribosomal subunit protein uS5
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
Coloring options: