J3_9VXM_016
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUCAG*CGCAAGU*AAAGACG
- Length
- 20 nucleotides
- Bulged bases
- 9VXM|1|AA|U|1270
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VXM_016 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.5938
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VXM|1|AA|C|1268
9VXM|1|AA|U|1269
9VXM|1|AA|U|1270
9VXM|1|AA|C|1271
9VXM|1|AA|A|1272
9VXM|1|AA|G|1273
*
9VXM|1|AA|C|1302
9VXM|1|AA|G|1303
9VXM|1|AA|C|1304
9VXM|1|AA|A|1305
9VXM|1|AA|A|1306
9VXM|1|AA|G|1307
9VXM|1|AA|U|1308
*
9VXM|1|AA|A|1317
9VXM|1|AA|A|1318
9VXM|1|AA|A|1319
9VXM|1|AA|G|1320
9VXM|1|AA|A|1321
9VXM|1|AA|C|1322
9VXM|1|AA|G|1323
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A1
- Small ribosomal subunit protein mS35
- Chain AC
- Small ribosomal subunit protein uS3m
- Chain AD
- Small ribosomal subunit protein uS5m
- Chain AG
- Small ribosomal subunit protein uS9m
- Chain AH
- Small ribosomal subunit protein uS10m
- Chain AK
- Small ribosomal subunit protein uS14m
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