J3_9VXN_027
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU
- Length
- 20 nucleotides
- Bulged bases
- 9VXN|1|S2|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|S2|A|40
9VXN|1|S2|G|41
9VXN|1|S2|A|42
9VXN|1|S2|U|43
9VXN|1|S2|U|44
9VXN|1|S2|A|45
9VXN|1|S2|A|46
9VXN|1|S2|G|47
*
9VXN|1|S2|C|479
9VXN|1|S2|G|480
9VXN|1|S2|C|481
9VXN|1|S2|G|482
9VXN|1|S2|C|483
9VXN|1|S2|A2M|484
9VXN|1|S2|A|485
9VXN|1|S2|A|486
9VXN|1|S2|U|487
*
9VXN|1|S2|A2M|512
9VXN|1|S2|G|513
9VXN|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SX
- Small ribosomal subunit protein uS12
Coloring options: