J3_9W0N_005
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 9W0N|1|1|U|321, 9W0N|1|1|C|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_005 not in the Motif Atlas
- Homologous match to J3_8B0X_034
- Geometric discrepancy: 0.0889
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9W0N|1|1|G|297
9W0N|1|1|G|298
9W0N|1|1|A|299
9W0N|1|1|A|300
9W0N|1|1|G|301
*
9W0N|1|1|C|316
9W0N|1|1|G|317
9W0N|1|1|C|318
9W0N|1|1|G|319
9W0N|1|1|A|320
9W0N|1|1|U|321
9W0N|1|1|A|322
9W0N|1|1|C|323
9W0N|1|1|A|324
9W0N|1|1|G|325
*
9W0N|1|1|C|337
9W0N|1|1|G|338
9W0N|1|1|U|339
9W0N|1|1|A|340
9W0N|1|1|C|341
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL4
- Chain u
- Large ribosomal subunit protein uL24
Coloring options: