J3_9W0N_006
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9W0N|1|1|U|686, 9W0N|1|1|A|792, 9W0N|1|1|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_006 not in the Motif Atlas
- Homologous match to J3_8B0X_016
- Geometric discrepancy: 0.1518
- The information below is about J3_8B0X_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9W0N|1|1|U|683
9W0N|1|1|G|684
9W0N|1|1|A|685
9W0N|1|1|U|686
9W0N|1|1|C|687
9W0N|1|1|U|688
9W0N|1|1|A|689
*
9W0N|1|1|U|773
9W0N|1|1|G|774
9W0N|1|1|G|775
*
9W0N|1|1|C|791
9W0N|1|1|A|792
9W0N|1|1|A|793
9W0N|1|1|A|794
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein bL34
- Chain b
- Large ribosomal subunit protein uL2
Coloring options: