J3_9W0N_010
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 9W0N|1|1|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_010 not in the Motif Atlas
- Homologous match to J3_8B0X_019
- Geometric discrepancy: 0.1517
- The information below is about J3_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9W0N|1|1|C|1306
9W0N|1|1|A|1307
9W0N|1|1|A|1308
9W0N|1|1|G|1309
*
9W0N|1|1|C|1605
9W0N|1|1|C|1606
9W0N|1|1|C|1607
9W0N|1|1|A|1608
9W0N|1|1|A|1609
9W0N|1|1|A|1610
9W0N|1|1|C|1611
*
9W0N|1|1|G|1620
9W0N|1|1|U|1621
9W0N|1|1|G|1622
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein bL34
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