J3_9W0N_017

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9W0N_017 not in the Motif Atlas

Homologous match to J3_8B0X_024

Geometric discrepancy: 0.1173

The information below is about J3_8B0X_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9W0N|1|1|C|2789
9W0N|1|1|U|2790
9W0N|1|1|G|2791
*
9W0N|1|1|C|2805
9W0N|1|1|C|2806
*
9W0N|1|1|G|2892
9W0N|1|1|A|2893
9W0N|1|1|G|2894

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL3