J3_9W0N_021
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9W0N|1|3|C|48, 9W0N|1|3|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_021 not in the Motif Atlas
- Homologous match to J3_8B0X_027
- Geometric discrepancy: 0.0914
- The information below is about J3_8B0X_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.3
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|3|G|46
9W0N|1|3|C|47
9W0N|1|3|C|48
9W0N|1|3|U|49
9W0N|1|3|A|50
9W0N|1|3|A|51
9W0N|1|3|C|52
*
9W0N|1|3|G|359
9W0N|1|3|G|360
9W0N|1|3|G|361
9W0N|1|3|G|362
9W0N|1|3|A|363
9W0N|1|3|A|364
9W0N|1|3|U|365
9W0N|1|3|A|366
9W0N|1|3|U|367
*
9W0N|1|3|A|393
9W0N|1|3|G|394
9W0N|1|3|C|395
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 0
- Elongation factor G
- Chain Q
- Small ribosomal subunit protein uS12
- Chain U
- Small ribosomal subunit protein bS16
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