J3_9W0N_023
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 9W0N|1|3|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_023 not in the Motif Atlas
- Homologous match to J3_8B0X_028
- Geometric discrepancy: 0.1213
- The information below is about J3_8B0X_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.7
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|3|C|586
9W0N|1|3|G|587
9W0N|1|3|G|588
*
9W0N|1|3|C|651
9W0N|1|3|U|652
9W0N|1|3|U|653
9W0N|1|3|G|654
9W0N|1|3|A|655
*
9W0N|1|3|U|751
9W0N|1|3|G|752
9W0N|1|3|A|753
9W0N|1|3|C|754
9W0N|1|3|G|755
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS8
- Chain Q
- Small ribosomal subunit protein uS12
- Chain T
- Small ribosomal subunit protein uS15
- Chain V
- Small ribosomal subunit protein uS17
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