J3_9W0N_025
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9W0N|1|3|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9W0N_025 not in the Motif Atlas
- Homologous match to J3_8B0X_004
- Geometric discrepancy: 0.0777
- The information below is about J3_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9W0N|1|3|C|826
9W0N|1|3|U|827
9W0N|1|3|U|828
9W0N|1|3|G|829
*
9W0N|1|3|C|857
9W0N|1|3|G|858
9W0N|1|3|G|859
9W0N|1|3|A|860
9W0N|1|3|G|861
*
9W0N|1|3|C|868
9W0N|1|3|G|869
9W0N|1|3|U|870
9W0N|1|3|U|871
9W0N|1|3|A|872
9W0N|1|3|A|873
9W0N|1|3|G|874
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS2
- Chain M
- Small ribosomal subunit protein uS8
- Chain Z
- Small ribosomal subunit protein bS21
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