J3_9WNQ_009
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9WNQ|1|A|A|975, 9WNQ|1|A|G|976, 9WNQ|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WNQ_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.1108
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9WNQ|1|A|U|955
9WNQ|1|A|U|956
9WNQ|1|A|U|957
9WNQ|1|A|A|958
9WNQ|1|A|A|959
9WNQ|1|A|U|960
9WNQ|1|A|U|961
9WNQ|1|A|C|962
*
9WNQ|1|A|G|973
9WNQ|1|A|A|974
9WNQ|1|A|A|975
9WNQ|1|A|G|976
9WNQ|1|A|A|977
9WNQ|1|A|A|978
9WNQ|1|A|C|979
9WNQ|1|A|C|980
9WNQ|1|A|U|981
9WNQ|1|A|U|982
9WNQ|1|A|A|983
9WNQ|1|A|C|984
*
9WNQ|1|A|G|1221
9WNQ|1|A|G|1222
9WNQ|1|A|C|1223
9WNQ|1|A|U|1224
9WNQ|1|A|A|1225
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
- Chain Z
- Transfer RNA; tRNA
Coloring options: