J3_9WNQ_011

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9WNQ|1|A|U|1212, 9WNQ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNQ_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1845

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9WNQ|1|A|C|990
9WNQ|1|A|U|991
9WNQ|1|A|U|992
9WNQ|1|A|G|993
9WNQ|1|A|A|994
9WNQ|1|A|C|995
9WNQ|1|A|A|996
9WNQ|1|A|U|997
*
9WNQ|1|A|A|1044
9WNQ|1|A|C|1045
9WNQ|1|A|A|1046
9WNQ|1|A|G|1047
*
9WNQ|1|A|C|1210
9WNQ|1|A|U|1211
9WNQ|1|A|U|1212
9WNQ|1|A|A|1213
9WNQ|1|A|C|1214
9WNQ|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14