J3_9WNQ_023

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9WNQ|1|b|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNQ_023 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0734

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9WNQ|1|b|G|297
9WNQ|1|b|G|298
9WNQ|1|b|A|299
9WNQ|1|b|A|300
9WNQ|1|b|G|301
*
9WNQ|1|b|C|316
9WNQ|1|b|G|317
9WNQ|1|b|C|318
9WNQ|1|b|G|319
9WNQ|1|b|A|320
9WNQ|1|b|U|321
9WNQ|1|b|A|322
9WNQ|1|b|C|323
9WNQ|1|b|A|324
9WNQ|1|b|G|325
*
9WNQ|1|b|C|337
9WNQ|1|b|G|338
9WNQ|1|b|U|339
9WNQ|1|b|A|340
9WNQ|1|b|C|341

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain v

50S ribosomal protein L24