J3_9WNR_024

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNR_024 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1073

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9WNR|1|b|C|698
9WNR|1|b|A|699
9WNR|1|b|G|700
*
9WNR|1|b|C|732
9WNR|1|b|G|733
9WNR|1|b|A|734
9WNR|1|b|A|735
9WNR|1|b|C|736
*
9WNR|1|b|G|760
9WNR|1|b|A|761
9WNR|1|b|U|762
9WNR|1|b|G|763

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2