J3_9WNR_027

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9WNR|1|b|A|1609, 9WNR|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WNR_027 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2514

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9WNR|1|b|C|1306
9WNR|1|b|A|1307
9WNR|1|b|A|1308
9WNR|1|b|G|1309
*
9WNR|1|b|C|1605
9WNR|1|b|C|1606
9WNR|1|b|C|1607
9WNR|1|b|A|1608
9WNR|1|b|A|1609
9WNR|1|b|A|1610
9WNR|1|b|C|1611
*
9WNR|1|b|G|1620
9WNR|1|b|U|1621
9WNR|1|b|G|1622

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34