J3_9WW4_027

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

9WW4|1|BA|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_027 not in the Motif Atlas

Homologous match to J3_9H3G_029

Geometric discrepancy: 0.0666

The information below is about J3_9H3G_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|A|40
9WW4|1|BA|G|41
9WW4|1|BA|A|42
9WW4|1|BA|U|43
9WW4|1|BA|U|44
9WW4|1|BA|A|45
9WW4|1|BA|A|46
9WW4|1|BA|G|47
*
9WW4|1|BA|C|479
9WW4|1|BA|G|480
9WW4|1|BA|C|481
9WW4|1|BA|G|482
9WW4|1|BA|C|483
9WW4|1|BA|A2M|484
9WW4|1|BA|A|485
9WW4|1|BA|A|486
9WW4|1|BA|U|487
*
9WW4|1|BA|A2M|512
9WW4|1|BA|G|513
9WW4|1|BA|U|514

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BQ

40S ribosomal protein S23

Chain BX

40S ribosomal protein S9