J3_9WW5_001
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 9WW5|1|AA|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW5_001 not in the Motif Atlas
- Homologous match to J3_8GLP_001
- Geometric discrepancy: 0.102
- The information below is about J3_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW5|1|AA|C|112
9WW5|1|AA|A|113
9WW5|1|AA|G|114
9WW5|1|AA|C|115
9WW5|1|AA|G|116
*
9WW5|1|AA|C|155
9WW5|1|AA|G|156
9WW5|1|AA|U|157
9WW5|1|AA|A|158
9WW5|1|AA|C|159
9WW5|1|AA|G|160
*
9WW5|1|AA|C|275
9WW5|1|AA|C|276
9WW5|1|AA|G|277
9WW5|1|AA|G|278
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AJ
- 60S ribosomal protein L7a
- Chain AN
- 60S ribosomal protein L13
- Chain AP
- 60S ribosomal protein L15
- Chain Aj
- 60S ribosomal protein L35
- Chain Ak
- 60S ribosomal protein L36
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