J3_9WW5_002

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

9WW5|1|AA|U|354, 9WW5|1|AA|A|362, 9WW5|1|AC|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_002 not in the Motif Atlas

Homologous match to J3_8GLP_024

Geometric discrepancy: 0.056

The information below is about J3_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.4

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

12

Unit IDs

9WW5|1|AA|C|351
9WW5|1|AA|G|352
9WW5|1|AA|A|353
9WW5|1|AA|U|354
9WW5|1|AA|A|355
9WW5|1|AA|G|356
9WW5|1|AA|U|357
9WW5|1|AA|C|358
9WW5|1|AA|A|359
9WW5|1|AA|A|360
9WW5|1|AA|C|361
9WW5|1|AA|A|362
9WW5|1|AA|A|363
9WW5|1|AA|G|364
9WW5|1|AA|U|365
9WW5|1|AA|A|366
9WW5|1|AA|C|367
*
9WW5|1|AA|G|374
9WW5|1|AA|G|375
9WW5|1|AA|A|376
9WW5|1|AA|A|377
9WW5|1|AA|A|378
9WW5|1|AA|G|379
*
9WW5|1|AC|C|21
9WW5|1|AC|U|22
9WW5|1|AC|C|23
9WW5|1|AC|G|24

Current chains

Chain AA

28S rRNA (3773-MER)

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain Aa

60S ribosomal protein L26

Chain Al

60S ribosomal protein L37

Chain An

60S ribosomal protein L39