J3_9WW5_007
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9WW5|1|AA|A2M|1534, 9WW5|1|AA|G|1641, 9WW5|1|AA|A|1642
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW5_007 not in the Motif Atlas
- Homologous match to J3_9AXU_009
- Geometric discrepancy: 0.0541
- The information below is about J3_9AXU_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9WW5|1|AA|U|1531
9WW5|1|AA|G|1532
9WW5|1|AA|A|1533
9WW5|1|AA|A2M|1534
9WW5|1|AA|C|1535
9WW5|1|AA|PSU|1536
9WW5|1|AA|A|1537
*
9WW5|1|AA|U|1622
9WW5|1|AA|A|1623
9WW5|1|AA|G|1624
*
9WW5|1|AA|C|1640
9WW5|1|AA|G|1641
9WW5|1|AA|A|1642
9WW5|1|AA|A|1643
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AD
- 60S ribosomal protein L8
- Chain AP
- 60S ribosomal protein L15
- Chain Al
- 60S ribosomal protein L37
- Chain An
- 60S ribosomal protein L39
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