J3_9WW5_017

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9WW5|1|AA|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_017 not in the Motif Atlas

Homologous match to J3_8GLP_007

Geometric discrepancy: 0.0534

The information below is about J3_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9WW5|1|AA|C|3937
9WW5|1|AA|G|3938
9WW5|1|AA|G|3939
*
9WW5|1|AA|C|4074
9WW5|1|AA|U|4075
9WW5|1|AA|G|4076
9WW5|1|AA|A|4077
9WW5|1|AA|C|4078
*
9WW5|1|AA|G|4168
9WW5|1|AA|G|4169
9WW5|1|AA|A|4170
9WW5|1|AA|C|4171
9WW5|1|AA|A|4172
9WW5|1|AA|G|4173

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain AJ

60S ribosomal protein L7a

Chain AP

60S ribosomal protein L15

Chain Ak

60S ribosomal protein L36