J3_9WW5_021
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- GUUG*CCUUC*GCACCGCACGUUC
- Length
- 22 nucleotides
- Bulged bases
- 9WW5|1|AA|U|4882, 9WW5|1|AA|A|4938, 9WW5|1|AA|C|4940, 9WW5|1|AA|A|4943, 9WW5|1|AA|C|4944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW5_021 not in the Motif Atlas
- Homologous match to J3_8GLP_036
- Geometric discrepancy: 0.077
- The information below is about J3_8GLP_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW5|1|AA|G|4751
9WW5|1|AA|U|4752
9WW5|1|AA|U|4753
9WW5|1|AA|G|4754
*
9WW5|1|AA|C|4879
9WW5|1|AA|C|4880
9WW5|1|AA|U|4881
9WW5|1|AA|U|4882
9WW5|1|AA|C|4883
*
9WW5|1|AA|G|4936
9WW5|1|AA|C|4937
9WW5|1|AA|A|4938
9WW5|1|AA|C|4939
9WW5|1|AA|C|4940
9WW5|1|AA|G|4941
9WW5|1|AA|C|4942
9WW5|1|AA|A|4943
9WW5|1|AA|C|4944
9WW5|1|AA|G|4945
9WW5|1|AA|U|4946
9WW5|1|AA|U|4947
9WW5|1|AA|C|4948
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL6
- Chain AO
- 60S ribosomal protein L14
- Chain AQ
- 60S ribosomal protein L13a
- Chain Ah
- 60S ribosomal protein L35a
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