J3_9WW5_029
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAU(PSU)(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 9WW5|1|BA|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW5_029 not in the Motif Atlas
- Homologous match to J3_9H3G_033
- Geometric discrepancy: 0.1137
- The information below is about J3_9H3G_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.2
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9WW5|1|BA|A|938
9WW5|1|BA|U|939
9WW5|1|BA|U|940
9WW5|1|BA|C|941
*
9WW5|1|BA|G|985
9WW5|1|BA|G|986
9WW5|1|BA|A|987
9WW5|1|BA|C|988
9WW5|1|BA|C|989
9WW5|1|BA|A|990
9WW5|1|BA|G|991
9WW5|1|BA|A|992
9WW5|1|BA|G|993
*
9WW5|1|BA|C|1000
9WW5|1|BA|A|1001
9WW5|1|BA|U|1002
9WW5|1|BA|PSU|1003
9WW5|1|BA|PSU|1004
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain Ar
- 60S ribosomal protein L37a
- Chain BD
- 40S ribosomal protein S3a
- Chain BR
- 40S ribosomal protein S26
- Chain BZ
- 40S ribosomal protein S13
- Chain Ba
- Small ribosomal subunit protein uS11
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