J3_9WW5_032

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGGA*UAC*G(G7M)AA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_032 not in the Motif Atlas

Homologous match to J3_9SUM_033

Geometric discrepancy: 0.2124

The information below is about J3_9SUM_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|U|1225
9WW5|1|BA|G|1226
9WW5|1|BA|G|1227
9WW5|1|BA|A|1228
*
9WW5|1|BA|U|1530
9WW5|1|BA|A|1531
9WW5|1|BA|C|1532
*
9WW5|1|BA|G|1638
9WW5|1|BA|G7M|1639
9WW5|1|BA|A|1640
9WW5|1|BA|A|1641

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BL

40S ribosomal protein S16

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19