J3_9WW5_033

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9WW5|1|BA|G|1256, 9WW5|1|BA|A|1258, 9WW5|1|BA|A|1260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_033 not in the Motif Atlas

Homologous match to J3_9SUM_034

Geometric discrepancy: 0.2609

The information below is about J3_9SUM_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|C|1237
9WW5|1|BA|PSU|1238
9WW5|1|BA|U|1239
9WW5|1|BA|A|1240
9WW5|1|BA|A|1241
9WW5|1|BA|U|1242
9WW5|1|BA|U|1243
9WW5|1|BA|PSU|1244
*
9WW5|1|BA|G|1255
9WW5|1|BA|G|1256
9WW5|1|BA|G|1257
9WW5|1|BA|A|1258
9WW5|1|BA|A|1259
9WW5|1|BA|A|1260
9WW5|1|BA|C|1261
9WW5|1|BA|C|1262
9WW5|1|BA|U|1263
9WW5|1|BA|C|1264
9WW5|1|BA|A|1265
9WW5|1|BA|C|1266
*
9WW5|1|BA|G|1516
9WW5|1|BA|G|1517
9WW5|1|BA|C|1518
9WW5|1|BA|U|1519
9WW5|1|BA|G|1520

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BI

40S ribosomal protein S10

Chain BK

40S ribosomal protein S15

Chain BM

40S ribosomal protein S18

Chain BO

40S ribosomal protein S20

Chain BT

40S ribosomal protein S29