J3_9WW5_038

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9WW5|1|BA|U|1535, 9WW5|1|BA|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW5_038 not in the Motif Atlas

Homologous match to J3_9PN5_043

Geometric discrepancy: 0.2025

The information below is about J3_9PN5_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|C|1532
9WW5|1|BA|A|1533
9WW5|1|BA|C|1534
9WW5|1|BA|U|1535
9WW5|1|BA|G|1536
*
9WW5|1|BA|C|1597
9WW5|1|BA|G|1598
9WW5|1|BA|U|1599
9WW5|1|BA|G|1600
9WW5|1|BA|A|1601
9WW5|1|BA|U|1602
9WW5|1|BA|G|1603
9WW5|1|BA|G|1604
*
9WW5|1|BA|C|1635
9WW5|1|BA|G|1636
9WW5|1|BA|A|1637
9WW5|1|BA|G|1638

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19

Chain Bd

40S ribosomal protein S25