J3_9XFK_010

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9XFK|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XFK_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1027

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9XFK|1|I|C|1306
9XFK|1|I|A|1307
9XFK|1|I|A|1308
9XFK|1|I|G|1309
*
9XFK|1|I|C|1605
9XFK|1|I|C|1606
9XFK|1|I|C|1607
9XFK|1|I|A|1608
9XFK|1|I|A|1609
9XFK|1|I|A|1610
9XFK|1|I|C|1611
*
9XFK|1|I|G|1620
9XFK|1|I|U|1621
9XFK|1|I|G|1622

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34