J3_9XFK_013

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9XFK|1|I|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XFK_013 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2121

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9XFK|1|I|C|2091
9XFK|1|I|U|2092
9XFK|1|I|G|2093
*
9XFK|1|I|C|2196
9XFK|1|I|U|2197
9XFK|1|I|A|2198
9XFK|1|I|A|2199
9XFK|1|I|C|2200
*
9XFK|1|I|G|2223
9XFK|1|I|G|2224
9XFK|1|I|A|2225
9XFK|1|I|C|2226
9XFK|1|I|A|2227
9XFK|1|I|G|2228

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28